High Protein Bagels

These customizable 3-ingredient base bagels can transform into matcha cranberry, double chocolate, or everything bagels - all ready in 26 minutes.

Total
26 min
Prep
10 min
Cook
16 min
Serves
2
Protein
12–15gper serving
Three seeded high-protein bagels on a wooden board next to a smiley mug and a carafe of milk

Why you’ll love it

  • Only 3 base ingredients create a high-protein foundation thanks to Greek yogurt - it's genius in its simplicity
  • Store uncooked bagels in the fridge for a week for easy grab-and-go breakfast options throughout the week
  • Completely customizable from sweet to savory with endless flavor combinations limited only by your imagination
  • Each bagel provides 12-15g protein from the Greek yogurt base alone, more with protein powder additions
  • Air fryer makes them perfectly crispy outside and soft inside in just 16 minutes - no boiling required like traditional bagels
The one step that mattersUse non-fat Greek yogurt for maximum protein with minimal fat - this gives you the best macro profile

These high-protein bagels are about to revolutionize your breakfast routine. With a simple base of just three ingredients - Greek yogurt, flour, and baking powder - you can transform them into whatever flavor your heart desires. Sweet, savory, matcha-infused, chocolate-loaded, or classic everything seasoning, these bagels do it all.

What I love most about this recipe is how meal-prep friendly it is. You can store the uncooked bagels in the fridge for up to a week and just pop them in the air fryer whenever you're feeling like a fresh, warm, high-protein snack. I created multiple variations, and the double chocolate version turned out so delicious I actually forgot to press record on the original ending because I was too busy eating them!

The base dough comes together in minutes, and from there you can get creative with inclusions. The matcha cranberry version is refreshing and beautiful with that vibrant green color, the double chocolate is basically dessert in bagel form, and the everything bagel is a classic savory option. Eating them warm is definitely my favorite way to enjoy them, especially with some salted butter and honey on the sweet versions.

I've experimented with so many variations of these beyond the three shown here - blueberry with lemon zest, cinnamon raisin, jalapeño cheddar, even pumpkin spice. The base is so versatile that once you master it, you can truly make any flavor combination you can imagine. They've become my go-to breakfast when I want something more substantial than just Greek yogurt but don't want to spend a lot of time cooking.

Crystal stirring Greek yogurt and flour together in a white bowl

About the ingredients

The genius of these bagels lies in the Greek yogurt. This isn't just adding protein - the Greek yogurt actually replaces both eggs and traditional leavening agents while creating a tender, slightly tangy base that tastes remarkably like real bagels. You'll want to use non-fat Greek yogurt for the best protein-to-calorie ratio, though full-fat works too if that's what you have on hand. The protein content in Greek yogurt is what makes these so satiating.

All-purpose flour creates the structure of the bagels. You'll need equal parts Greek yogurt and flour by weight (100g each for the base recipe), which makes it super easy to remember and scale up or down. The combination of yogurt and flour creates what's known as a "2-ingredient dough" that's become popular for good reason - it works! No yeast, no long rise times, no complicated techniques.

Baking powder and salt round out the base with just a teaspoon of each. The baking powder helps create a bit of lift and chewiness that makes these feel more like traditional bagels, while the salt enhances flavor and balances the tanginess of the yogurt. From there, the variations get fun. Matcha powder adds a beautiful green color and earthy flavor without overwhelming the bagel - just 5g is perfect. Dried cranberries add pops of tartness and chewiness in the matcha version. For the double chocolate bagels, chocolate protein powder amps up the protein even more while creating a rich chocolate flavor, and mini chocolate chips make them legitimately feel like dessert for breakfast. And for the everything bagel, well, everything bagel seasoning is all you need to sprinkle on top before air frying - it's the easiest variation.

Crystal weighing the bagel dough on a kitchen scale

How I make it

The process is incredibly straightforward - mix the dry ingredients, add the Greek yogurt, knead until it comes together, then customize with your chosen flavors. The dough should be slightly sticky but workable. If it's too dry, add a tiny bit more yogurt. If it's too sticky, add a bit more flour. You'll get a feel for the right consistency after making these once.

For the chocolate variation, the protein powder absorbs a lot of moisture, so you'll need to add extra Greek yogurt gradually until the dough comes together properly. Every protein powder is different in how much liquid it absorbs, so this is something you adjust by feel rather than exact measurements.

Shaping the bagels is simple - divide the dough in half, roll each piece into a ball, poke a hole through the center with your finger, and gently stretch it into a bagel shape. The hole will close up slightly during cooking, so make it bigger than you think it needs to be.

The air fryer is perfect for these because it creates that crispy exterior while keeping the interior soft and tender. Eight minutes per side at 350°F is the magic formula. They come out golden brown and perfect every time. If you're using an oven instead, the baking time is slightly longer but the results are still great - they just won't be quite as crispy on the outside.

Tips from my kitchen

  • Use non-fat Greek yogurt for maximum protein with minimal fat - this gives you the best macro profile
  • Bread flour is not required but all-purpose flour works perfectly fine - I use AP flour exclusively
  • For the chocolate variation, add extra Greek yogurt one spoonful at a time until dough forms - protein powder makes it drier than you'd expect
  • Store uncooked bagels in the fridge and air fry fresh whenever you want one - game changer for busy mornings
  • Best enjoyed warm right out of the air fryer - that's when the texture is absolute perfection
  • If you don't have an air fryer, bake at 350°F for 20-25 minutes, flipping halfway through baking time
  • Sweet versions are incredible with butter and honey or cream cheese and jam
  • Savory versions are perfect for breakfast sandwiches - I make egg and cheese sandwiches with the everything bagels

High Protein Bagels

These customizable 3-ingredient base bagels can transform into matcha cranberry, double chocolate, or everything bagels - all ready in 26 minutes.
Prep
10 min
Cook
16 min
Total
26 min
Serves
2
Calories
180–220

Ingredients

Base Recipe (makes 2 bagels)
  • 100g all-purpose flour (about 3/4 cup, but weighing is most accurate)
  • 100g non-fat Greek yogurt (about 1/3 cup - use thick, high-protein yogurt)
  • 1 tsp baking powder
  • 1 tsp fine salt
Matcha Cranberry Variation
  • Base recipe ingredients
  • 5g matcha powder (about 1 tsp - use culinary grade matcha)
  • 30g dried cranberries (about 3 tbsp)
Double Chocolate Variation
  • Base recipe ingredients
  • 1 scoop (approximately 30g) chocolate protein powder
  • 3/4 cup mini chocolate chips
  • Extra Greek yogurt (add 1 spoonful at a time as needed - usually 2-4 tbsp total)
Everything Bagel Variation
  • Base recipe ingredients
  • 2-3 tbsp everything bagel seasoning (for topping - don't skimp, be generous!)

Instructions

  1. In large bowl, whisk together 100g flour, 1 tsp baking powder, and 1 tsp salt until evenly distributed.
  2. Add 100g Greek yogurt to dry ingredients. Use spoon to start mixing, then switch to hands when it gets too thick. Knead in bowl for 2-3 minutes until dough comes together. It should be slightly sticky but workable.
  3. Now customize your flavor:
  4. **Matcha Cranberry:** Add 5g matcha powder to dough and knead until color is evenly distributed and vibrant green throughout, about 1-2 minutes. Fold in 30g dried cranberries, distributing evenly.
  5. **Double Chocolate:** Add 1 scoop chocolate protein powder and mix thoroughly. Dough will become very dry and crumbly. Add extra Greek yogurt 1 tbsp at a time, mixing after each addition, until mixture forms cohesive ball (usually needs 2-4 tbsp). Fold in 3/4 cup mini chocolate chips throughout dough.
  6. **Everything:** Proceed with plain base dough (seasoning goes on top before cooking).
  7. Divide dough into 2 equal pieces. Roll each piece between palms into smooth ball first.
  8. Use index finger to poke hole through center of each ball. Gently stretch and rotate to create bagel shape with decent-sized hole (at least 1.5 inches diameter - it will shrink during cooking).
  9. If making everything bagels, generously sprinkle everything seasoning on top of each bagel now, pressing gently so it adheres well.
  10. Preheat air fryer to 350°F for 3-5 minutes.
  11. Place shaped bagels in air fryer basket with space between them (don't crowd - cook in batches if needed).
  12. Air fry for 8 minutes on first side without opening air fryer - let them develop nice golden crust.
  13. Carefully flip bagels using tongs or spatula. Air fry for another 8 minutes on second side until both sides are golden brown and bagels are cooked through with no doughy center.
  14. Remove from air fryer and let cool 1-2 minutes, but these are absolute best enjoyed warm!
  15. **Sweet versions:** Slice and slather with butter and drizzle with honey, or spread with cream cheese and jam
  16. **Everything bagels:** Classic with cream cheese, or make breakfast sandwich with eggs, cheese, and your favorite toppings
  17. **Oven Method (if no air fryer):**
  18. Preheat oven to 350°F. Place bagels on parchment-lined baking sheet. Bake 20-25 minutes total, flipping at 10-12 minute mark, until golden brown on both sides.
Nutrition, per bagel (base recipe)
180-220 (plain/everything), 250-280 (chocolate) calories12-15g (base), 18-22g (with protein powder) protein30-35g carbs2-4g (base), 8-10g (chocolate) fat1-2g fiber

Questions I get about this one

Can I store these bagels?

Absolutely! In fact, that's one of the best parts of this recipe. You can store the uncooked, shaped bagels in an airtight container in the fridge for up to a week. Just pull one out and air fry it fresh whenever you want a warm bagel. This makes meal prep so easy! I usually make a big batch on Sunday and have fresh bagels all week long.

Why does the chocolate version need more Greek yogurt?

Protein powder absorbs a lot of moisture, which makes the dough dry and crumbly if you don't compensate for it. By adding extra Greek yogurt a spoonful at a time, you're rehydrating the dough until it comes together into a cohesive ball. Every protein powder is different in terms of absorption, so add yogurt gradually until you get the right consistency. Start with one tablespoon and add more as needed.

Can I bake these instead of using an air fryer?

Yes! If you don't have an air fryer, bake them in a regular oven at 350°F for about 20-25 minutes total, flipping them halfway through at the 10-12 minute mark. They won't get quite as crispy on the outside, but they'll still be delicious and perfectly cooked through. I made these in the oven for months before I got an air fryer.

Made it? Tell me how it went

Your rating
Jump to recipeWatch